PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014018
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 368aa    MW: 41558.2 Da    PI: 7.2448
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682735PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-51476PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.3e-18237271135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C t kTp+WR gp g+ktLCnaCG+++++ +l
  Lsa014018 237 CLHCATDKTPQWRTGPLGPKTLCNACGVRFKSGRL 271
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-773328IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.11231267IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-16231281IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14233295No hitNo description
Gene3DG3DSA:3.30.50.109.1E-14235269IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-13236283No hitNo description
PfamPF003208.2E-16237271IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNMENTEFVH ESSPNHPQQF SPEKLKTENF LIDDLLNFPA DEMVPAVAEN IVSGASTDSS  60
TIVDTCNSPL CGGAEHNSPG DVPRRSFTDA PFTSDLCVPY DDLAELEWLS NVVEESFSCE  120
DLQKLQLISG IKTRPNYTSN NQQFQPETVS KANNPIFNTD MAVPGKARTK RSRAAPCNWT  180
SRLLAVSPTA SGTTVTMSSE SESDIASSSI RKKIVKAGIK RKEVYDNPSH NGDGRKCLHC  240
ATDKTPQWRT GPLGPKTLCN ACGVRFKSGR LVPEYRPAAS PTFVTAKHSN SHRKVMELRR  300
QNEMHQHQYM HQNQRQHQHQ SQHQHHHHHH QQQQQQQLFH HSNMIFDVPN NDDYLIHQHV  360
GPDYRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758652.10.0GATA transcription factor 12-like
SwissprotP697811e-89GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2J6LPV40.0A0A2J6LPV4_LACSA; GATA transcription factor
STRINGXP_010249552.11e-137(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-89GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]