PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013457

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C3H

Protein Properties

Length: 349aa MW: 39922.1 Da PI: 5.8739

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-22388	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5e-06	89	112	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Lsa013457 89 KSILCEFFKA-GQCAKGFKCKFSHD 112 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-4	87	113	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-6	87	112	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.159	87	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	89	112	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1	157	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.784	157	195	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	9.0E-16	214	293	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MPPKQSKAEL AKKQKIVEDK TFGLKNKNKS KNVQKYVQSL QQNVQPKPDA SKLAAKKKKE 60 EEKAREKELN DLFKIAVVQP KVPLGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNIQRKGE 120 KIDIFSDKRD EGTMEDWDQE TLEKVVESKG KEYNQNKPTD IVCKHFLEAV EKKQYGWFWV 180 CPNGNKECHY RHALPPGYIL KSQMKALLEE ESNKLAIEDE IEDQRAKVKT TTPMTTELFL 240 EWKRKKVEER DAGLAAQRAE RAKNDRMSGR ELFLSDASVF VDDAEAYEKY HREEEPDKGQ 300 NGTSTAGPST STSVADIEEE DDDDLDMDEL NELEASLSKA SIQIKEPQK

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MPPKQSKAEL AKKQKIVEDK TFGLKNKNKS KNVQKYVQSL QQNVQPKPDA SKLAAKKKKE  60
EEKAREKELN DLFKIAVVQP KVPLGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNIQRKGE  120
KIDIFSDKRD EGTMEDWDQE TLEKVVESKG KEYNQNKPTD IVCKHFLEAV EKKQYGWFWV  180
CPNGNKECHY RHALPPGYIL KSQMKALLEE ESNKLAIEDE IEDQRAKVKT TTPMTTELFL  240
EWKRKKVEER DAGLAAQRAE RAKNDRMSGR ELFLSDASVF VDDAEAYEKY HREEEPDKGQ  300
NGTSTAGPST STSVADIEEE DDDDLDMDEL NELEASLSKA SIQIKEPQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747121.1	0.0	zinc finger CCCH domain-containing protein 11-like isoform X2
Swissprot	Q0JHZ2	0.0	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A2J6JLK8	0.0	A0A2J6JLK8_LACSA; Uncharacterized protein
STRING	Gorai.002G251700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-165	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]