PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa013249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRAS | ||||||||
Protein Properties | Length: 175aa MW: 20614.6 Da PI: 8.4366 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 43 | 7.2e-14 | 2 | 172 | 205 | 374 |
GRAS 205 nlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnv 297 n+++ l ++ + + +++ e++k+ k++ + ++++ + e +++ ns++++ f + l +y al++s+e ++p+ e+ri +E +l++ +++ Lsa013249 2 NCMVGLPHMGRTRRTTQ--VLEFIKIAKGIlvkNKGIITFGDGEeSERmgNSPDYASFFNKHLAHYKALYESMEWGFPSYLnEARIAMETLFLAPYVSSF 99 66666666663333333..36677777776343445888887553444469**************************9975599**************99 PP GRAS 298 vacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 ++ + ++r++ + ++e +G+k ++s + ++a+ ++r+ + y++ ++++++vl W++ pLv vSaWr Lsa013249 100 SWFQKWK-EQREN------MVFQEgFGLKGERMSMESRNEAREMVREGQTP-YKIRvegDDHNEMVLEWREIPLVRVSAWR 172 8888887.33333......34444489999*****************9944.6666447779******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.5E-11 | 2 | 172 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
FNCMVGLPHM GRTRRTTQVL EFIKIAKGIL VKNKGIITFG DGEESERMGN SPDYASFFNK 60 HLAHYKALYE SMEWGFPSYL NEARIAMETL FLAPYVSSFS WFQKWKEQRE NMVFQEGFGL 120 KGERMSMESR NEAREMVREG QTPYKIRVEG DDHNEMVLEW REIPLVRVSA WRQIK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023758272.1 | 1e-127 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2J6LQP0 | 1e-125 | A0A2J6LQP0_LACSA; Uncharacterized protein | ||||
STRING | XP_004305115.1 | 2e-55 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-07 | GRAS family protein |