PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa012854 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 254aa MW: 27103.6 Da PI: 7.1637 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6.2e-09 | 211 | 253 | 5 | 52 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 h+++Er RR+ri +++ + ++l+P+a K +Ka++L + ++Y+k Lsa012854 211 HSIAERLRRERIAEKMKRYKKLVPNA-----NKTDKASMLDEIIDYVK 253 99***********************8.....6**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-11 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.30E-9 | 204 | 253 | No hit | No description |
PROSITE profile | PS50888 | 15.167 | 206 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 206 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-6 | 211 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSLQDLQNVT NSYDHTSSHE DFLEQMLCGL QSGVSWPEIS TGTGGGGGAG QNKPVFPWDV 60 DHFDDQSSFL ASKLRQHQIS AGTGGAGNPS SAVKSLLLQQ QWLLSRGLTG AGDSGLFEND 120 IIDASSFKSP SGDNSIQTLF NGFAGSLQSN QTQDFHFPPA QSFGSQGTTA SLTNQGPTSG 180 GVTAAGGGGS GPPTQPRQRV RARRGQTTDP HSIAERLRRE RIAEKMKRYK KLVPNANKTD 240 KASMLDEIID YVKX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 220 | RLRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733802.1 | 1e-149 | transcription factor bHLH66-like | ||||
TrEMBL | A0A2J6KFP1 | 1e-148 | A0A2J6KFP1_LACSA; Uncharacterized protein | ||||
STRING | VIT_11s0037g00040.t01 | 5e-60 | (Vitis vinifera) | ||||
STRING | cassava4.1_007217m | 2e-60 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 7e-20 | LJRHL1-like 1 |