PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa012100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 147aa MW: 16202.3 Da PI: 10.006 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp g ++r++lg+f+taeeAaka++ a+ +++g Lsa012100 23 HYRGVRKRP-WGRYAAEIRDP---GTKTRVWLGTFDTAEEAAKAYDTAAVNFRG 72 7********.**********8...325**********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.868 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 23 | 82 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.44E-32 | 23 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-38 | 23 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-13 | 23 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-12 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-12 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MVMKNNASKP VTEAKIPGVD QVHYRGVRKR PWGRYAAEIR DPGTKTRVWL GTFDTAEEAA 60 KAYDTAAVNF RGTKAKINFP PSIDDVDGQS PSQSSIVECS TSSLDGRPPF HRPLELDLTR 120 RLDVSVAGYQ LFHNGGQKTV AVVPHPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 23 | 84 | 5 | 67 | ATERF1 |
3gcc_A | 5e-23 | 23 | 84 | 5 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023738258.1 | 1e-105 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q40477 | 2e-43 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2J6K5J8 | 1e-104 | A0A2J6K5J8_LACSA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068959 | 4e-43 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 3e-26 | ethylene responsive element binding factor 4 |
Publications ? help Back to Top | |||
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