PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa012080 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||||||
Protein Properties | Length: 222aa MW: 24063.2 Da PI: 5.3742 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 47 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aa+a++ a+ +++g Lsa012080 47 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFSTAEMAARAHDVAAMSIKG 97 68*****998.**********843...6**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 47 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 48 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 48 | 105 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.985 | 48 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 48 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-31 | 49 | 107 | No hit | No description |
PRINTS | PR00367 | 6.4E-11 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAALPQTPEP DTPSSSSESA SLHKGVEAPA ASKMKKRSRK DVSYKHPVYR GVRMRSWGKW 60 VSEIRQPRKK SRIWLGTFST AEMAARAHDV AAMSIKGNSA VLNFPELKDS LPRPVSLSPR 120 DVQEAAAKGA TMLEFTSSGT PAPPLRPPPG DGSNPADELG EIIELPSLEG CLDSPESSTG 180 LVMVDLVDRW MYPSWAVADI DGFLDFISDQ VAENGSSNLI WD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 40 | 106 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023734295.1 | 1e-161 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 3e-54 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2J6KEC9 | 1e-159 | A0A2J6KEC9_LACSA; Uncharacterized protein | ||||
STRING | XP_009367456.1 | 2e-58 | (Pyrus x bretschneideri) | ||||
STRING | Solyc06g066540.1.1 | 2e-58 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-56 | ERF family protein |
Publications ? help Back to Top | |||
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