PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011779
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 263aa    MW: 29417 Da    PI: 7.4992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679871PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-21904PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19101149355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  ++k++g
  Lsa011779 101 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDTEARKIRG 149
                9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-37100163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32100158IPR001471AP2/ERF domain
PROSITE profilePS5103224.157100157IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22100158IPR016177DNA-binding domain
CDDcd000181.34E-32101158No hitNo description
PRINTSPR003676.2E-12101112IPR001471AP2/ERF domain
PfamPF008479.3E-12101149IPR001471AP2/ERF domain
PRINTSPR003676.2E-12123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
RGDPSVLSYN QNLPTSLKIN TQIVTATMCG GAIIADLIPR PRRLNPTNVW PNSTVYPKLN  60
PFQSEFNHFV EETSPVHKRA PLSSDDGHES STRKRQRKNL YRGIRQRPWG KWAAEIRDPR  120
KGVRVWLGTF NTAEEAARAY DTEARKIRGR KAKVNFPNEG DSYNCASLRN GSSVSFSNEA  180
IGSGGKGFVP AMVKEIVTEK KAEVVQEVNE VEKLSEELMA YESYMKFYEM PYLEGEPAEM  240
PANPEGGVGG GSLELWSFDD DVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-221011671579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740943.11e-176ethylene-responsive transcription factor ERF071-like
TrEMBLA0A2J6JZS91e-154A0A2J6JZS9_LACSA; Uncharacterized protein
STRINGXP_009608570.13e-75(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-48ERF family protein