PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011660
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 662aa    MW: 71266.8 Da    PI: 6.6677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693879PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-8268PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07270290526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ G C++Gd C +aHg
  Lsa011660 270 PCPDFRK-GACRRGDMCEYAHG 290
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002044.87E-1311137No hitNo description
SuperFamilySSF484039.02E-1612139IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.7E-1515138IPR020683Ankyrin repeat-containing domain
PfamPF127967.3E-920128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0565989IPR002110Ankyrin repeat
PROSITE profilePS5029714.42459167IPR020683Ankyrin repeat-containing domain
SMARTSM002480.04194126IPR002110Ankyrin repeat
PROSITE profilePS5008810.39294129IPR002110Ankyrin repeat
SMARTSM003564.0E-6265291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4269292IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582270292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4298328IPR000571Zinc finger, CCCH-type
SMARTSM0035655300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVMSPLTVET EDSFSSLLEY AANNDYEAFK RSIENDPSAI DEVGMWYVRK KGSKQIVLEH  60
RTPLMVASTY GSINVLKLII SQPKVDVNFA CGPDKVTALH CATSGGSPAA IEAVKLLLSV  120
GADPNLEDVN GHRPVDVIVV PPKLSGVKAS IEGLLMNNGL TLSLTMNMTG SWSPTMSSSP  180
ENGSGSCSPV MSKFENEIPV NSEKKEYPID PSLPDIKNSI YSTDEFRMFS FKVRPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ  300
YRTRLCKDGT SCARRVCFFA HMPEELRPLY VSTGSAVPSP RSAAAGATVM DMAAALNLLP  360
GSPSSMSMSM SPTGNSPWPQ PNVPTLHLPG SNLQSSRLRS SLSARDIPPE DLSLLRDFDS  420
QLLNEFACFS QSRSSRSRTA LAPANLEDLF SSEIGSSPRY SDQVAAGGGG GGGVFXTFTQ  480
IHGSQQRAFS DQYEQFIASS FGVSSPGRMS PRSMDHSPMA AAARLSAFNH REQLRSLSSR  540
DFTGTGSPVG HNTSSSWSKW GSPTGKVDWS VNGEEFGKLK RSSSFELKNN GGGGGGGGGG  600
GTDEPDLSWV QSLVKESPPE MMKNKAAAPP PTGGGAAAPP SGEDHSVLGA WLEQMQLDQL  660
VA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742734.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2J6JVW00.0A0A2J6JVW0_LACSA; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]