PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011617

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C3H

Protein Properties

Length: 367aa MW: 41916 Da PI: 4.934

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685544	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-47098	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.4e-06	89	112	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Lsa011617 89 KSILCEFFKA-GQCAKGFKCKFSHD 112 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-4	87	113	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-6	87	112	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.159	87	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-5	89	112	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.2	157	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.784	157	195	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	8.1E-17	214	294	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MPPKQSKAEV AKKQKVVEDK TFGLKNKNKS KNVQKYVQAL QLNAVPKPDP SKLAAKKKKD 60 EEKAREKELN DLFKIAVVQP KVPPGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNIQRKGE 120 KIDIFSDKRD EDTMEEWDQE MLEKVIESKG KEYNQNKPTD IVCKHFLDAV ERKQYGWFWV 180 CPNGNKECHY RHALPPGYIL KSQMKALLEE EANKLAIEDE IEDQRAKVKT TTPMTTDLFM 240 DWKKMKMDEK EAGLAAQRAE RAKNDRMSGR ELFLSDASLF VDDAEAYEKY HREEEPDNTT 300 QKAQDNSSTG GPSTSTSVAA VSEEGNSQIH DDDDDEDDDD DDLDMDELNE LEASLSRTSI 360 QIREPVK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MPPKQSKAEV AKKQKVVEDK TFGLKNKNKS KNVQKYVQAL QLNAVPKPDP SKLAAKKKKD  60
EEKAREKELN DLFKIAVVQP KVPPGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNIQRKGE  120
KIDIFSDKRD EDTMEEWDQE MLEKVIESKG KEYNQNKPTD IVCKHFLDAV ERKQYGWFWV  180
CPNGNKECHY RHALPPGYIL KSQMKALLEE EANKLAIEDE IEDQRAKVKT TTPMTTDLFM  240
DWKKMKMDEK EAGLAAQRAE RAKNDRMSGR ELFLSDASLF VDDAEAYEKY HREEEPDNTT  300
QKAQDNSSTG GPSTSTSVAA VSEEGNSQIH DDDDDEDDDD DDLDMDELNE LEASLSRTSI  360
QIREPVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023740864.1	0.0	zinc finger CCCH domain-containing protein 11-like
Swissprot	Q0JHZ2	0.0	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A2J6JZY6	0.0	A0A2J6JZY6_LACSA; Uncharacterized protein
STRING	XP_008384304.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-138	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]