PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011466

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

LSD

Protein Properties

Length: 620aa MW: 68670.6 Da PI: 3.9012

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-28792	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	22.3	2.2e-07	526	547	1	22
zf-LSD1 1 CggCrtlLsYPrGApsVRCalC 22 Cg+Cr lLsYP GA++V C +C Lsa011466 526 CGSCRRLLSYPKGARYVECGCC 547 ********************** PP
2	zf-LSD1	39	1.3e-12	564	587	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC++lL+YP+GAp VRC +C t Lsa011466 564 CGGCDVLLMYPYGAPKVRCVNCST 587 **********************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.7E-10	523	547	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.5E-6	526	547	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.2E-9	561	589	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.4E-10	564	587	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MEEDDGAPSG RSSPPTPKKV KLESEEPKEL LKAEDHSEDE SEEIEEDEDE EEDGDGSPQL 60 PPLLDMIDLP PASTLPPTPP LPSSPRDLNM EQQDSEDEGP PPGWDNTYQL QEQVEHMLTP 120 AAVSAISSDI RMEDLQQDGR NGEDAAPELI ASDMKVEEQD SEDEGPPPGW DSKCLPETEL 180 QVAYPQITQS DIKTEDLQED IRNGNGATTA PELVPSDMKV EEQDSEEDER PPPGWDSKCQ 240 PEPELQMPFP TPTITQSDMK TEEVQQDAPQ PQLVLVPSDM KVEEQDSEED EGPPPGWDSK 300 GQPQPKSTDM QTEDAQQDAW NGQHPTPQPQ LVLSDVKVEE QDSEEDEGPP PGWDQPQPES 360 TDIKTTEEIQ HDVQNGDGPQ PQPQQPHDGP APALELAPSG CEKSAIKVEE KDSETDERAP 420 PGWDSKCTPP SESKIEDDQQ KQQDEDGQGQ GQGWGSSSTP QPPPPHSIGE RMGTEFEQKQ 480 KNVEAAVVVE LERPQSQPQP PSRQQPPSTT TKKTNNPIPE MGQMVCGSCR RLLSYPKGAR 540 YVECGCCLEE NYVLEEHEVG QVICGGCDVL LMYPYGAPKV RCVNCSTETE IGDQNRRPPL 600 SEQQRRARRH LRRVQTGFKY

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MEEDDGAPSG RSSPPTPKKV KLESEEPKEL LKAEDHSEDE SEEIEEDEDE EEDGDGSPQL  60
PPLLDMIDLP PASTLPPTPP LPSSPRDLNM EQQDSEDEGP PPGWDNTYQL QEQVEHMLTP  120
AAVSAISSDI RMEDLQQDGR NGEDAAPELI ASDMKVEEQD SEDEGPPPGW DSKCLPETEL  180
QVAYPQITQS DIKTEDLQED IRNGNGATTA PELVPSDMKV EEQDSEEDER PPPGWDSKCQ  240
PEPELQMPFP TPTITQSDMK TEEVQQDAPQ PQLVLVPSDM KVEEQDSEED EGPPPGWDSK  300
GQPQPKSTDM QTEDAQQDAW NGQHPTPQPQ LVLSDVKVEE QDSEEDEGPP PGWDQPQPES  360
TDIKTTEEIQ HDVQNGDGPQ PQPQQPHDGP APALELAPSG CEKSAIKVEE KDSETDERAP  420
PGWDSKCTPP SESKIEDDQQ KQQDEDGQGQ GQGWGSSSTP QPPPPHSIGE RMGTEFEQKQ  480
KNVEAAVVVE LERPQSQPQP PSRQQPPSTT TKKTNNPIPE MGQMVCGSCR RLLSYPKGAR  540
YVECGCCLEE NYVLEEHEVG QVICGGCDVL LMYPYGAPKV RCVNCSTETE IGDQNRRPPL  600
SEQQRRARRH LRRVQTGFKY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023744512.1	0.0	proline-, glutamic acid- and leucine-rich protein 1-like isoform X2
Refseq	XP_023744514.1	0.0	proline-, glutamic acid- and leucine-rich protein 1-like isoform X4
TrEMBL	A0A2J6JS77	0.0	A0A2J6JS77_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	9e-33	lsd one like 2