PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011388
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 364aa    MW: 41045.9 Da    PI: 7.5755
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688394PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.5e-1542101155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ ++ Aa a++ a++k++g
  Lsa011388  42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEKAAAHAYDLAALKYWG 101
                57*******************999955656446**********99*************98 PP
2AP251.23.1e-16144195155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Lsa011388 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195
                89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1142101IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1642110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-1643110IPR001471AP2/ERF domain
PROSITE profilePS5103219.82343109IPR001471AP2/ERF domain
SMARTSM003806.3E-2643115IPR001471AP2/ERF domain
PRINTSPR003674.2E-64455IPR001471AP2/ERF domain
CDDcd000182.64E-23144205No hitNo description
SuperFamilySSF541711.05E-17144205IPR016177DNA-binding domain
PfamPF008475.8E-12144195IPR001471AP2/ERF domain
PROSITE profilePS5103218.334145203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17145204IPR001471AP2/ERF domain
SMARTSM003801.2E-24145209IPR001471AP2/ERF domain
PRINTSPR003674.2E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAKISQKKNA SSNDTNDKKP VISKAKRTRK TVQRDSPPQR SSIYRGVTRH RWTGRYEAHL  60
WDKNCWNESQ NKKGRQVYLG AYDDEKAAAH AYDLAALKYW GQDTILNFPL QTYEEELREM  120
DSLSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPDQKDPNN SNGSQTNFDL NPPPDAASSQ  240
DPGLSSYYNN SNNQNQQPES SSSGETTTSV APPPRGSTGS NTASSALGLL FQSTKFKEML  300
ERTSVADSPS TPPESDLPRR SFPDDIQTYF DCSQESNSYA EGEDNMFAEL NSYAAPMFQC  360
ELDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744145.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-118AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2J6JT320.0A0A2J6JT32_LACSA; Uncharacterized protein
STRINGEOY261531e-176(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-101AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]