PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011299

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C3H

Protein Properties

Length: 265aa MW: 29399.7 Da PI: 6.8276

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694009	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.8	2.1e-09	72	94	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C+ff rtGtC++G C+F+H+ Lsa011299 72 ENCSFFVRTGTCRFGRMCRFNHP 94 89********************9 PP
2	zf-CCCH	31.2	3.7e-10	122	143	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+f++ G+CkyG++C+F+H++ Lsa011299 122 PCKFYQI-GHCKYGESCRFNHSK 143 87777.***********95 PP
3	zf-CCCH	38.1	2.6e-12	165	188	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e+C+f++rtG C yG++CkF+H+p Lsa011299 165 ENCSFYMRTGVCGYGASCKFHHPP 188 68********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.45E-6	65	96	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-4	68	95	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.526	68	96	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-7	72	94	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-4	74	94	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.704	117	144	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-5	118	143	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-6	119	142	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-7	121	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-6	122	145	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.1E-5	161	188	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-6	163	188	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-9	165	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.493	166	189	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	167	186	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDEGIKEKFF SDLRCLFDQK PEVDSLIQGF ENVGLKGKQI DTSSEDMEDL SSDGDFSISN 60 RDMQHPIRPD AENCSFFVRT GTCRFGRMCR FNHPVSTKIY VDRGKSNIFG AGSSSKSLSR 120 IPCKFYQIGH CKYGESCRFN HSKSEPENSL PRLNVLGFPE RLGCENCSFY MRTGVCGYGA 180 SCKFHHPPPI FFTVESMDSQ NEASEINEGD AGHVVPHFSQ STNSHVRVLK FGSFPSVTSG 240 NLEKNQHPVT DGSSTSESPS GGKTK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735181.1	0.0	zinc finger CCCH domain-containing protein 43-like
TrEMBL	A0A2J6KCE5	1e-173	A0A2J6KCE5_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-35	C3H family protein