PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011121
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 581aa    MW: 63111.6 Da    PI: 5.3612
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32102184PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-51033PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.36.4e-1212115741374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav++++l+la+al++++  la++++ +m ++a+yf+ ALa+r+++    +y    p++  e++  e l++   f+e +P+lkf+h+taNq
  Lsa011121 211 LVHTLMACAEAVQQDNLKLADALVKHVGLLAASQAGAMGKVATYFAGALAQRIYK----IY----PQDGLETSCWEILQM--HFYESCPYLKFAHFTANQ 300
                689***************************************************9....44....444443333444333..5***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198
                aIlea++g++rvH+iDf+++qG+QWpaL+qaLa R++gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+d++ ++L+++p  
  Lsa011121 301 AILEAFAGATRVHVIDFSLNQGMQWPALIQALALRAGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVANSLADIDASMLDIRPse 400
                **************************************************************************************************88 PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnv 297
                 E++aVn+v++lhrll++++++e     vL+ +k ++Pk+v++veqe++hn++ F++++ +++         + + ++ ++s+ r +    +l+ + +nv
  Lsa011121 401 VEVVAVNSVFELHRLLARPGAVET----VLNSIKAMKPKIVTLVEQESNHNGAVFFRQVQRSFTLLFHHVRLVgKLGVDSTSQSRFSDVGGVLRAADMNV 496
                899*************99999999....*******************************999887777777776677778999999988999******** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                vaceg++r+erhetl++Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Lsa011121 497 VACEGTDRVERHETLSQWRNRLNSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 574
                *****************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120414.5E-3042105IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.4E-3442111No hitNo description
PROSITE profilePS5098558.894185553IPR005202Transcription factor GRAS
PfamPF035142.2E-118211574IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MKRDRERERK KEAKPSSSSS MAVGIGKAKD LHQSLPDSGG MDELLEVLGY KVRSTDMADV  60
AKKLEQLEMV MGEDGILQLS DTVHYNPSDL SGWVQSMLSE LNTNSSDNSS STNFGIVLPG  120
ESSSTTMIDF SNNKQIDTQQ TGGKMYDDDP YDLRAIAGGA IYGTTAEESP VSRNGIKRMK  180
AAAPGSEAVD VPPESPKPVV LVDSQEVGIR LVHTLMACAE AVQQDNLKLA DALVKHVGLL  240
AASQAGAMGK VATYFAGALA QRIYKIYPQD GLETSCWEIL QMHFYESCPY LKFAHFTANQ  300
AILEAFAGAT RVHVIDFSLN QGMQWPALIQ ALALRAGGPP AFRLTGIGPP QPDNTDALQQ  360
VGWKLAQLAD TIGVEFEFRG FVANSLADID ASMLDIRPSE VEVVAVNSVF ELHRLLARPG  420
AVETVLNSIK AMKPKIVTLV EQESNHNGAV FFRQVQRSFT LLFHHVRLVG KLGVDSTSQS  480
RFSDVGGVLR AADMNVVACE GTDRVERHET LSQWRNRLNS AGFDPVHLGS NAFKQASMLL  540
ALFAGGDGYR VEENDGCLML GWHTRPLIAT SAWQPGSTII E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5321857726382Protein SCARECROW
5b3h_A3e-5321857725381Protein SCARECROW
5b3h_D3e-5321857725381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735507.10.0DELLA protein GAI-like
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLA0A2J6KBS80.0A0A2J6KBS8_LACSA; Uncharacterized protein
STRINGXP_009334448.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]