PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011065

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 374aa MW: 43092.2 Da PI: 6.1543

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685977	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.4	1.4e-49	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd++ k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk v+s + Lsa011065 13 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIREVDLNKLEPWDIQDKCNIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVVHS-SL 110 69**************************.9***********954443122456******************************9999.89 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g++ktLvfykgrap+g+k+d +mheyrl Lsa011065 111 RRIGMRKTLVFYKGRAPHGQKSDYIMHEYRL 141 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-55	9	173	IPR003441	NAC domain
PROSITE profile	PS51005	53.391	13	173	IPR003441	NAC domain
Pfam	PF02365	4.2E-26	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MDLSVNVNGQ SKVPPGFRFH PTEEELLHYY LRKKVAYEKI DLDVIREVDL NKLEPWDIQD 60 KCNIGSTPQN DWYFFSHKDK KYPTGTRTNR ATAAGFWKAT GRDKVVHSSL RRIGMRKTLV 120 FYKGRAPHGQ KSDYIMHEYR LDDNIITTQD SSASNMSDYT HEEGWVVCRV FKKKNYHKSL 180 ESPHRSLPDS MDTRAQLQLL NKDDVLEQLL VYMDSRSCKQ EIENFTTTQF VNPMFLHLPR 240 LASSTQLTTS PPESSATFDQ GSSLKTYDSM SDLLAEAEHS RNIHTKMMED HECISNWADL 300 DKFVASQLNG QMEESKQLYS CYGSESNDEK LDFSVDKDEQ DVSARRNVAS CNSELDIWSL 360 TRPSSLDPLC HLSI

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MDLSVNVNGQ SKVPPGFRFH PTEEELLHYY LRKKVAYEKI DLDVIREVDL NKLEPWDIQD  60
KCNIGSTPQN DWYFFSHKDK KYPTGTRTNR ATAAGFWKAT GRDKVVHSSL RRIGMRKTLV  120
FYKGRAPHGQ KSDYIMHEYR LDDNIITTQD SSASNMSDYT HEEGWVVCRV FKKKNYHKSL  180
ESPHRSLPDS MDTRAQLQLL NKDDVLEQLL VYMDSRSCKQ EIENFTTTQF VNPMFLHLPR  240
LASSTQLTTS PPESSATFDQ GSSLKTYDSM SDLLAEAEHS RNIHTKMMED HECISNWADL  300
DKFVASQLNG QMEESKQLYS CYGSESNDEK LDFSVDKDEQ DVSARRNVAS CNSELDIWSL  360
TRPSSLDPLC HLSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-48	13	175	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770455.1	0.0	NAC domain-containing protein 43-like
Swissprot	Q84WP6	1e-117	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A2J6MEN5	0.0	A0A2J6MEN5_LACSA; Uncharacterized protein
STRING	EOY23867	1e-142	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-109	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]