PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010909
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26961.8 Da    PI: 9.3043
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-7197PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+ rqvtfskRr+g+lKKA+E+SvLCda va+i+fss+gkl+eys+
  Lsa010909  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAHVALIVFSSRGKLFEYST 59
               79***********************************************96 PP
2K-box88.81e-298617511100
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++  s++ e++kL ++ie L+++ Rh+ Ge+LesL+lkeL+++eqq++++lk+iR+kKn+l++e+i++l kkek+lq++ ++L kkl+e
  Lsa010909  86 NETPGSWTLESSKLMAKIEVLEKNMRHYAGEGLESLNLKELHSVEQQIDTALKRIRTKKNQLMHESISQLHKKEKALQDQRNTLYKKLNE 175
                5566799*******************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.721161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-32282IPR002100Transcription factor, MADS-box
CDDcd002651.61E-42276No hitNo description
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.64789179IPR002487Transcription factor, K-box
PfamPF014863.3E-2691173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AHVALIVFSS RGKLFEYSTH  60
SSMEAILERY ERCSYAEKLL TTTPGNETPG SWTLESSKLM AKIEVLEKNM RHYAGEGLES  120
LNLKELHSVE QQIDTALKRI RTKKNQLMHE SISQLHKKEK ALQDQRNTLY KKLNEKEANT  180
DLQPPHIPAP DPVHHSLPID VDPFLETDVR EEGYGGDHRI SATSLPPWML QHVHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20170169MEF2C
5f28_B3e-20170169MEF2C
5f28_C3e-20170169MEF2C
5f28_D3e-20170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737692.11e-173truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ424297e-85AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2J6MBZ21e-172A0A2J6MBZ2_LACSA; Uncharacterized protein
STRINGXP_009625854.12e-89(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-82AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]