PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010821
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 544aa    MW: 60535.2 Da    PI: 6.693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692555PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-28268PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06261281526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd C +aHg
  Lsa010821 261 PCPEFRK-GSCRQGDACEYAHG 281
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.9E-1525188IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-1331146IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-763134IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.68168146IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0946898IPR002110Ankyrin repeat
CDDcd002041.41E-1170146No hitNo description
SMARTSM002480.0043103135IPR002110Ankyrin repeat
PROSITE profilePS5008810.74103138IPR002110Ankyrin repeat
SMARTSM003561.0E-4256282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4260283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662261283IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4261281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4289320IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.075291315IPR000571Zinc finger, CCCH-type
SMARTSM0035645291314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MCTGDVVVDH AEGQKQDRVV SNISILLELA AADDLDGFRS VVEQDGFDVN DSGLWYGRSI  60
GSKKMRLEER TPLMIASMFG SKQVLKFILG LNRVDVNKAC GSDRATALHM AVAGGSKSSV  120
EVVKLLINAS ADISCLDVHG NLPVDLIPLV FGSSFSSKKK FLELLLNGEE LTDDDHIEEH  180
KFSAILISSK ESPEKKEYPI DLSLPDMKNG IYNTDEFRMY TFKIKPCSRA YSHDWTECPF  240
VHPGENARRR DPRKYHYSCV PCPEFRKGSC RQGDACEYAH GIFECWLHPA QYRTRLCKDE  300
IGCNRKVCFF AHKPEELRPL HPSTGSAVLS PRSLSFSSDI SSISPFSLSS PSIMIPPSSN  360
SPVSTPIWSN QSSPTMKGVS SRFSRATSSR DLDLESELIR ADIYRQQQLI DNFSNPSFGS  420
DYFEEIEARI NPLHQNMNYS SGLPSSPLRM SSQIMNSRSA AFAKRSQSFI DRGTANRQLG  480
VPTMAASKLS DWGSPDGKLN WGIQKDELNK LRKSASFGVR GSGNNVTSEE DQYFSPWVED  540
QLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769395.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ41e-174C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2J6L1H60.0A0A2J6L1H6_LACSA; Uncharacterized protein
STRINGXP_006425080.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-154C3H family protein