PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa010703 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||||||
Family | C3H | ||||||||||||
Protein Properties | Length: 225aa MW: 26210.7 Da PI: 9.0799 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.7 | 2.7e-10 | 25 | 49 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yktelC +f+r GtC y drC+FaHg Lsa010703 25 YKTELCLRFQR-GTCDYADRCCFAHG 49 9**********.*************9 PP | |||||||
2 | zf-CCCH | 19.8 | 1.4e-06 | 88 | 108 | 5 | 25 |
--SGGGGTS.--TTTTT-SS-S CS zf-CCCH 5 lCrffartG.tCkyGdrCkFaH 25 lC + + G C++Gd+C+F+H Lsa010703 88 LCWRVMN-GdKCQFGDKCHFNH 108 5555666.559*********** PP | |||||||
3 | zf-CCCH | 34.3 | 3.9e-11 | 137 | 163 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++t+lC++++ tG C+yG +C+FaHg+ Lsa010703 137 WRTKLCNRWMSTGSCPYGFKCCFAHGE 163 79***********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-10 | 21 | 50 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-6 | 23 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 24 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-7 | 25 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.554 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-15 | 131 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.77E-9 | 135 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-9 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MFQNENQFPK RLRTSEPMPN RRTQYKTELC LRFQRGTCDY ADRCCFAHGY GHLSGFDKWQ 60 ELTALDGASR IKYLDENQNP KCSDRSRLCW RVMNGDKCQF GDKCHFNHIK TERESAVISV 120 LNVAGRSEMQ QQKKTPWRTK LCNRWMSTGS CPYGFKCCFA HGESELRKQR SNDVQAYAEN 180 APCDKKIDGK QREFKWKNVE KIGRVYADWI TDTPLVHVVT GNLAS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023760445.1 | 1e-171 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A103YBG2 | 1e-112 | A0A103YBG2_CYNCS; Zinc finger, CCCH-type |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 8e-23 | C3H family protein |