PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010595
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 327aa    MW: 36146.9 Da    PI: 5.2261
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-43578PU_unrefplantGDBView CDS
PUT-187a-Lactuca_sativa-54487PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.3e-15166219356
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                ++kr +r+ +NRe+ArrsR+RK+  + eLe+ v++L +e ++L k+l + +++ 
  Lsa010595 166 DVKRFKRMVSNRESARRSRKRKQDHLTELEQQVEQLRGEYTTLFKQLTSASQQF 219
                689*****************************************7666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-12159220No hitNo description
SMARTSM003381.1E-14164228IPR004827Basic-leucine zipper domain
PfamPF001703.5E-13166218IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.703166229IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.49E-12167218No hitNo description
CDDcd147022.47E-19169219No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDNFTHNKKE EAFNDSSMCN PMSRTLSDYD IGELLKQSMA ADADHRGDPF SAVDDVVFGN  60
DYDCKSYAAD GCSPDLAVHY RNLDIVNRFS SHGGITGSPL WSRNLTSKNS SITMTMDSQS  120
SICVESPTSA TKPKNVIGAT SDDEQSDDDD TEIEAGQCEQ SNDQMDVKRF KRMVSNRESA  180
RRSRKRKQDH LTELEQQVEQ LRGEYTTLFK QLTSASQQFK DASTNNRVLK ADVEALRAKV  240
KLAEDMVARG SLTSSLSHLI QNHLTTPQLF NNQNMSRMGN VSPTITVRGD DHPGLPLPGQ  300
HVMVGHADIF KNGISSDAGS CVSDIWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180186RRSRKRK
2180187RRSRKRKQ
3182187SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742342.10.0basic leucine zipper 9-like
SwissprotQ9FUD38e-66BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A2J6JWS60.0A0A2J6JWS6_LACSA; Uncharacterized protein
STRINGVIT_04s0008g02750.t011e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-63basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]