PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010488
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 340aa    MW: 39165.8 Da    PI: 5.2731
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689458PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-27463PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.82.4e-2264159184
   trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                +W+++ v++Li+++ +++++ ++             +kk++W++vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d+
  Lsa010488  64 KWSDSRVRLLIQIVASVGDDDGAIDggstrkssgclQKKGKWKSVSKIMVSKGCQVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPSLMDS 159
                7**************777766642223355567888**********************************************55888888877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2062187No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MANNLFMETK ILNPNTSYLS FGKPKSDGSL NDHNMSDEDE PSFMEDGSGA KGRKGSSSQW  60
QRMKWSDSRV RLLIQIVASV GDDDGAIDGG STRKSSGCLQ KKGKWKSVSK IMVSKGCQVS  120
PQQCEDKFND LNKRYKRLND ILGRGTSCRV VENPSLMDSI PRLSPKMKED VKKILSSKHL  180
FYPEMCAYHN GQKIPNCTEL ESSPIVGQSS KDDDSDHEDE DESEDDDESE DDGEREKGST  240
HNVNVFFDEM NEFFEDVNNS KVQKKEWVMK RMVLLHEQRI GIESEAFEME KRRFKWQRFC  300
DRKDRELEVS RLENERLMLE NERMTLQLKR KDHVMDSVSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733245.10.0kinesin-related protein 4-like
TrEMBLA0A2J6KGR50.0A0A2J6KGR5_LACSA; Uncharacterized protein
STRINGXP_009768464.11e-123(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.17e-58sequence-specific DNA binding transcription factors