PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa010437 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 29267.9 Da PI: 6.2939 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.2 | 1.1e-27 | 88 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k ++gkw++tk+++eH+H l+p Lsa010437 88 FYNAYATRLGFLIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KVVRQRVETRVGCRAMVLVRKINSGKWVITKFVKEHTHLLTP 175 ******************************************9988..99************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-24 | 88 | 175 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDFEVDDDVN SEVLLNSTEI QPQKGDEDDM AMVGCSLEEV FHNNHEHDIK IDQDEPESGT 60 IPLDGSHNVI EEPYIGQEFE SEASAHAFYN AYATRLGFLI RVSKLSRSRR DGSAIGRALV 120 CNKEGFRMPD KREKVVRQRV ETRVGCRAMV LVRKINSGKW VITKFVKEHT HLLTPGKGRR 180 DLIYDQYPNE HDKIRELSQQ LAIEKRRSAA YKRHLEMVFE HIEEHNRSLS KKIQEIVNNV 240 NAMESKEFET CQK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023736576.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A118K4W6 | 1e-136 | A0A118K4W6_CYNCS; FAR1 DNA binding domain-containing protein | ||||
STRING | XP_010097543.1 | 1e-123 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-102 | FAR1 family protein |