PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010418
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 476aa    MW: 53753.7 Da    PI: 9.3346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686559PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07371420147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+ lG+g+W+ I  +     ++Rt  ++k++w ++
        Lsa010418 371 RRPFSVSEVEALVEAVETLGTGRWRDIKLRAFddaNHRTYVDLKDKWKTL 420
                      678999*********************988888999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.61E-6213289IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.671366425IPR017930Myb domain
SMARTSM007171.1E-7370423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-10371421IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15372453IPR009057Homeodomain-like
CDDcd116603.45E-17372422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
XAFDLLASIA DKLLQESESS TSSTSPQKDQ ITLPKESPHS DNDSGLEHVS DVKTNVKLEP  60
CEAKNVDKME GDLCNFNLFN SIAEIQTEGV NVKKQSGDFT ASDPMESCVN TCVLTKSYSS  120
LNLPSKRVNV KMGIRDDTKM RAFREKSHAR YRRIRKMMAY RYQKVTLKKN YQLPNTTISE  180
TKPNENREKI YSKDRCQTEA PSKRRKLFHE KSGNGDSHVK FSIKSFKIPE LYIEIPETAT  240
VGSLKRTVME AVSAILGGEL HVGIFLKGKK VKDNDRTLQQ TGISRDSDLK SLGFTLEPNL  300
FQAIIPSPLE KEAPFQDKNH EMIATSAANS SLDYHVDENQ EFVPLQTELL KEGMSLVQVT  360
KKCEASQRRI RRPFSVSEVE ALVEAVETLG TGRWRDIKLR AFDDANHRTY VDLKDKWKTL  420
VHTAGISPQQ RRGEPVPQGL LDRVQAAHSY WSQHQRKHQT KPVQILAGSS VESVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-563584664112Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737259.10.0telomere repeat-binding protein 3-like
SwissprotQ9C7B12e-93TRP3_ARATH; Telomere repeat-binding protein 3
TrEMBLA0A103YD851e-169A0A103YD85_CYNCS; Homeodomain-like protein
STRINGXP_009799099.11e-116(Nicotiana sylvestris)
STRINGMigut.F00779.1.p1e-116(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-79TRF-like 2
Publications ? help Back to Top
  1. Hwang MG,Cho MH
    Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding.
    Nucleic Acids Res., 2007. 35(4): p. 1333-42
    [PMID:17272298]
  2. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]