PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010402
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 221aa    MW: 24601.3 Da    PI: 6.2513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678767PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-174998255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +  +g+Wv+eIr+p++   + r++lg++  +e+Aa+a++ a+++++g
  Lsa010402 49 IYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYRNPEMAARAHDVAALSIKG 98
               69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.79E-3148108No hitNo description
PfamPF008471.8E-114898IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3049107IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2149107IPR016177DNA-binding domain
SMARTSM003802.1E-3349112IPR001471AP2/ERF domain
PROSITE profilePS5103222.349106IPR001471AP2/ERF domain
PRINTSPR003673.7E-95061IPR001471AP2/ERF domain
PRINTSPR003673.7E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSADNLNSEA DDSSSNSFTS PPSSPNHKPK HPKTKTIKRS RDSSTKHPIY RGVRMRNWGK  60
WVSEIREPRK KSRIWLGTYR NPEMAARAHD VAALSIKGNS AIINFPDLVG SLPRPISSSP  120
RDVQAAAAKA AAMDTFDFPP PPSTVVSEPE ELSEITELPI LGTSFESAEL NNEFVYIDSM  180
VDGWLYPPHE WINKSGDDDG GHYSGQKNVV SNEFESLLWN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1740106572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743105.11e-162dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2J6JV211e-160A0A2J6JV21_LACSA; Uncharacterized protein
STRINGXP_004291182.18e-76(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]