PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010273

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 405aa MW: 44694.3 Da PI: 10.0435

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-20569	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46	1.4e-14	76	163	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + + ++ +qCk++++ ++k+yk +k+ ++ + st++++d+l+ Lsa010273 76 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYLKAPKTDIQCKNRIDTVKKKYKLEKAKIASG--GGPSTWSFYDRLD 163 7***********************************85433445577889*****************97..67779****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-25	74	165	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MEDDEEIQSH PSAGSGSPSS PRSNRRITVT VATAAPPQNT LTLALPIQQP RTVGGGGGGG 60 GGGGGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA DIVSSREDYL 120 KAPKTDIQCK NRIDTVKKKY KLEKAKIASG GGPSTWSFYD RLDQLIGPTA TAKSGSSLLT 180 TPPLRAVPMG IPVGVRSAPV QSLRLKQQQE RQQQLLQQQQ QQQQQLQQQR KRLRPPPAYS 240 DSSESEPEAS PDSPESDSYE QKRPRVPLPF NANSNSTTRQ QQQDRGRGVG GREKNWGDSV 300 RELTRAIMKF GEAYEQAESS KLQQMVEMQK QSMKFAKELE LQRMQFFMKT QLELSQLKHS 360 RKGVGNNTTN HHHSHNHNNT HNHHNSSNHN TINSNNNNHS DDSNN

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MEDDEEIQSH PSAGSGSPSS PRSNRRITVT VATAAPPQNT LTLALPIQQP RTVGGGGGGG  60
GGGGGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA DIVSSREDYL  120
KAPKTDIQCK NRIDTVKKKY KLEKAKIASG GGPSTWSFYD RLDQLIGPTA TAKSGSSLLT  180
TPPLRAVPMG IPVGVRSAPV QSLRLKQQQE RQQQLLQQQQ QQQQQLQQQR KRLRPPPAYS  240
DSSESEPEAS PDSPESDSYE QKRPRVPLPF NANSNSTTRQ QQQDRGRGVG GREKNWGDSV  300
RELTRAIMKF GEAYEQAESS KLQQMVEMQK QSMKFAKELE LQRMQFFMKT QLELSQLKHS  360
RKGVGNNTTN HHHSHNHNNT HNHHNSSNHN TINSNNNNHS DDSNN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023773099.1	0.0	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	1e-109	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A251RZ35	1e-170	A0A251RZ35_HELAN; Putative sequence-specific DNA binding transcription factor
STRING	VIT_09s0002g00720.t01	1e-136	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-57	sequence-specific DNA binding transcription factors