PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009970
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 301aa    MW: 35310.5 Da    PI: 4.8677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692359PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06228247625
                -SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                C+f+ +tG C++G rC++ H
  Lsa009970 228 CPFHIKTGACRFGMRCNRVH 247
                ******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.61222250IPR000571Zinc finger, CCCH-type
PRINTSPR018481.5E-12228247IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.5E-12247267IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTEPVTTGQT DDQEVGTPDN MEERNPSPKA VSRKEKRKAL KKDKRKQIRK ELAEKARTEE  60
EARLNDPEVK RKIELEEERE KERLEKERKE FEERERIFLE ELQKKKEEEE EEERRNAVES  120
ESKPKQEGTE EVSNEDDDEW EYIEEGPPEI IWQGNEIIVK KNKVKVKKKE ANQSIQKEDP  180
DRPTSNPLPP QSEAYAAFKN APMTPTELLD TVAQQVPNFG TEQDKAHCPF HIKTGACRFG  240
MRCNRVHYYP DKSTTLLIKN MYNGPGLAWE QDEGLEVCCW VQPVIRNLSQ DPHWKFMNLA  300
F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736056.10.0zinc finger CCCH domain-containing protein 5-like
SwissprotQ9SY742e-84C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A2J6KAM00.0A0A2J6KAM0_LACSA; Uncharacterized protein
STRINGXP_010252404.12e-91(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.19e-56C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]