PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009896
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 227aa    MW: 26141.2 Da    PI: 9.4189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679957PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.3e-12104145351
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 +GV++ k + +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Lsa009896 104 MRGVYY-K-NMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 145
                79**96.5.7*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-8103148IPR016177DNA-binding domain
PfamPF008472.4E-6103146IPR001471AP2/ERF domain
SMARTSM003807.1E-5103160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-6105149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSIRRQRLI KLYGRSPSLD LISSFENGHS PGGGWVQHGR QVSMHPTPLV DRSTEEKTKC  60
EEPESLNVNE SSSSNKQQPF QLPVFKRRKR HRRKHFENQE PCIMRGVYYK NMKWQAAIKV  120
DKKQIHLGTV GSQEEAARLY DRAAFMCGRE PNFELTVEEK DELSKLSWDE FLTVTRSAIN  180
SKKHQRRVSS RMKFEHPSQN KDDDQKAEED QGGNSFSASD DAETSAS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755073.11e-171ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP91e-44ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2J6LXL21e-170A0A2J6LXL2_LACSA; Uncharacterized protein
STRINGPOPTR_0002s24750.46e-68(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.21e-46ERF family protein