PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa009583 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||||||
Protein Properties | Length: 307aa MW: 34427.4 Da PI: 8.371 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.6e-18 | 119 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g++ AeIr p k++r +lg+f+t+eeAa a+++a+ +++g Lsa009583 119 TRYRGVRRRP-WGKFTAEIRNP---ErKKARLWLGTFDTPEEAAVAYDKAAFQFRG 170 68********.**********7...3347***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-13 | 119 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.14E-31 | 119 | 178 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-22 | 120 | 179 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-31 | 120 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 120 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 120 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
XGGDTIKFVY ITPTTQKQTH ISSMETLSSP LQSGYSVFDA IRKHLLDDRD EAPEMLPAVT 60 SPSSDQSCFS KENGPESLKK IMEQESGEGE NHTKSENVKK KKKKKTPAAN GEDDPVEWTR 120 YRGVRRRPWG KFTAEIRNPE RKKARLWLGT FDTPEEAAVA YDKAAFQFRG SRAKVNFPLL 180 LCQDVWKPES SSSSTNADVG KCKKKVAVDP PMGTTTSALV RHDDTHTLST IEPPVSTNIA 240 VEKESRSDKD LVTKPCKSTV HSPTTSASGT EEMCDLDSIW DFKHVHYHLF HRWYRLAITP 300 CSQANHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-25 | 121 | 179 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 104 | KKKKKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023760012.1 | 0.0 | ethylene-responsive transcription factor ERF034-like | ||||
TrEMBL | A0A2J6LM21 | 0.0 | A0A2J6LM21_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-29 | ethylene-responsive element binding factor 13 |