PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009292
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 299aa    MW: 33413.4 Da    PI: 8.8782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-34869PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18149197355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+g
  Lsa009292 149 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAFAYDTAAYLLRG 197
                8******9.**********955...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.29E-31147207No hitNo description
SMARTSM003808.8E-37148211IPR001471AP2/ERF domain
PROSITE profilePS5103222.142148205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-31148206IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-22148205IPR016177DNA-binding domain
PfamPF008474.6E-11149197IPR001471AP2/ERF domain
PRINTSPR003671.5E-10149160IPR001471AP2/ERF domain
PRINTSPR003671.5E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MENHQFPKID TFLQKETMSS TSYFQEYAKH TQFFGNSIIW NGVSRPSSSS SSSSPSSSSS  60
SPSSSSSSSS PSFPINFLET FSQLNLPSSQ ATEPSFTTIM QPQNMSSYGD YWLKATKTQP  120
MKYTGRQIPD TTLKRTSLLA SVCSPGKLFR GVRQRHWGKW VAEIRLPRNR TRVWLGTFDT  180
AEDAAFAYDT AAYLLRGDYA HLNFPNLKNQ LKANSINGNT AALLEAKLQA LSQKGIAKLS  240
PPLQENTLSE TSRNSEVNNE KIKKQMEEEV SDVVEGVQLS RMPSWDMDMI WDAILVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21144215168ATERF1
3gcc_A6e-21144215168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745716.10.0ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ08e-68ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A2U1L4A21e-111A0A2U1L4A2_ARTAN; DNA-binding domain-containing protein
STRINGXP_006420915.11e-82(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-50ERF family protein