PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009092

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 270aa MW: 30491.2 Da PI: 9.7535

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-45874	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	10	53	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+ E +l+ +a +++ ++ +W ++a++++ g+t ++ + Lsa009092 10 WTPLENKLFENALAKFDKDtpdRWQRVAEMVP-GKTVADVMRQYK 53 ******************************.**99988775 PP
2	Myb_DNA-binding	46.6	7.7e-15	124	168	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r +Rt+ q+ s+ qky Lsa009092 124 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVVTRTPTQVASHAQKY 168 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.541	5	58	IPR017884	SANT domain
SMART	SM00717	7.3E-9	6	58	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.59E-11	8	63	IPR009057	Homeodomain-like
CDD	cd00167	3.97E-7	10	55	No hit	No description
Pfam	PF00249	1.5E-6	10	53	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.727	117	173	IPR017930	Myb domain
SuperFamily	SSF46689	6.58E-17	118	172	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-18	120	172	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.7E-12	121	168	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-13	121	171	IPR001005	SANT/Myb domain
CDD	cd00167	1.57E-11	124	169	No hit	No description
Pfam	PF00249	1.2E-12	124	168	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEESLKSRIW TPLENKLFEN ALAKFDKDTP DRWQRVAEMV PGKTVADVMR QYKELEDDVS 60 SIEAGLYPKY GYNNNTCPFT LEWGNNHGLN TSRSPPYGGG GKRSPVDVIA AGRPVEQERK 120 KGVPWTEEEH KLFLLGLKKY GKGDWRNISR NYVVTRTPTQ VASHAQKYFI RQLSGGKDKR 180 RASIHDITTV NVNENQNSLP KNKRTSPEQC KFQWSHPGGG GGDATMAFDQ TNGSMFMSPR 240 YKGNGGLHEF YGGSQSMVFQ MQPAMHYPHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	9e-13	8	68	9	69	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023739233.1	0.0	transcription factor DIVARICATA-like isoform X1
Swissprot	Q8S9H7	1e-108	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2J6K3F0	0.0	A0A2J6K3F0_LACSA; Uncharacterized protein
STRING	XP_002525595.1	1e-113	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	2e-75	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]