PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa008819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | AP2 | ||||||||
Protein Properties | Length: 468aa MW: 51458.3 Da PI: 5.5071 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 176 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Lsa008819 176 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 225 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.2 | 8.5e-13 | 268 | 318 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+ + eAa+a+++a+ k +g Lsa008819 268 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEVEAARAYDKAAIKCNG 318 89********.7******...5...334336**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-9 | 176 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-15 | 176 | 234 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 177 | 233 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.32E-11 | 177 | 232 | No hit | No description |
SMART | SM00380 | 3.6E-30 | 177 | 239 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.372 | 177 | 233 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-8 | 268 | 318 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.38E-25 | 268 | 326 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-16 | 268 | 327 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-16 | 269 | 326 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.158 | 269 | 326 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-29 | 269 | 332 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-6 | 270 | 281 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-6 | 308 | 328 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MLDLNVDVVV SVDDSGFIRD RIEFETAKNV SEDRQSEIQY SGTSVSSDVL NADDDPPVTN 60 ADDEGSVSYT ASNIEKLRYH IGIVDRIGKV KEVSNGISGG LITRQFFPVD SDLELEDEEL 120 GSQSITSSPL ATSLLGSHWL NLKVPEPAVA PQNLQVHPPP PQQAKKSRRG PRSRSSQYRG 180 VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAL AAARAYDRAA IKFRGIDADI NFHINEYEED 240 MAQVKNLSKE EFIHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKYVYLGLFD 300 NEVEAARAYD KAAIKCNGKE AVTNFEPRIY GADISLEAMD EEASGHNLDL NLGISPTKDS 360 PRANLQAQTQ AQAPLLWPSN MYYGFTPNNE EKAIGMASAN NIQGLSAWQM QMLGGNYGMG 420 VTFPIPVSSS IAASSGFSST TTTVFSNGGS IQQPTNMARG TSSSIYFQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024991285.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q84TB5 | 8e-99 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A2J6K015 | 0.0 | A0A2J6K015_LACSA; Uncharacterized protein | ||||
STRING | VIT_13s0019g03550.t01 | 1e-115 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-95 | related to AP2.7 |
Publications ? help Back to Top | |||
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