PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008424

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 397aa MW: 45446.8 Da PI: 5.2173

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58681968	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.8	1.8e-28	234	321	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k ++gkw++tk+++eH+H+l+p Lsa008424 234 FYNAYATKVGFVIRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMVLVRKVSSGKWVITKFVKEHTHPLTP 321 9***************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-25	234	321	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
LPPSPTPVVR RWYTDEYRIE CSGVESESEE WRILSRIEVP SPWPIPSFLS RPYTMAAAMS 60 SLKYIDEGRI GEDNGGKEIT AVVDGSIGGG GLFCWCGARS DSCVGFRSGS RCFKIQRKEE 120 EQEVDSYERV ERRRETKETM DFEVDDDDVN GEVLLNSTEL EIESRKGDED DNDNDNDMVG 180 CSLEGVLFHN NHDIKIDQDE PERGIIPLDG SHNVNIEEPY IGQEFESEAS AHAFYNAYAT 240 KVGFVIRVSK LSRSRRDGTA IGRALVCNKE GFRMPDKREK IVRQRVETRV GCRAMVLVRK 300 VSSGKWVITK FVKEHTHPLT PGKGRRDLIY DQYPNEHDKI RELSQQLAIE KRRSATYKRH 360 LEMVFEHIEE HNQSLSKKIQ EIVNNVSAME SKEIETH

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

LPPSPTPVVR RWYTDEYRIE CSGVESESEE WRILSRIEVP SPWPIPSFLS RPYTMAAAMS  60
SLKYIDEGRI GEDNGGKEIT AVVDGSIGGG GLFCWCGARS DSCVGFRSGS RCFKIQRKEE  120
EQEVDSYERV ERRRETKETM DFEVDDDDVN GEVLLNSTEL EIESRKGDED DNDNDNDMVG  180
CSLEGVLFHN NHDIKIDQDE PERGIIPLDG SHNVNIEEPY IGQEFESEAS AHAFYNAYAT  240
KVGFVIRVSK LSRSRRDGTA IGRALVCNKE GFRMPDKREK IVRQRVETRV GCRAMVLVRK  300
VSSGKWVITK FVKEHTHPLT PGKGRRDLIY DQYPNEHDKI RELSQQLAIE KRRSATYKRH  360
LEMVFEHIEE HNQSLSKKIQ EIVNNVSAME SKEIETH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023751002.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251VR50	1e-140	A0A251VR50_HELAN; Putative FAR1 DNA binding domain, FHY3/FAR1 family
STRING	XP_010097543.1	1e-125	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	9e-99	FAR1 family protein