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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lsa007846 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family |
GRAS |
| Protein Properties |
Length: 350aa MW: 38951.3 Da PI: 8.9671 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Lsa#S58681420 | PU_unref | Unigene | View CDS |
| PUT-187a-Lactuca_sativa-7069 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 287.6 | 3.4e-88 | 44 | 345 | 70 | 374 |
GRAS 70 seknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerL 165
++++ ++ laa++l++++sP++kf+h+taNqaI eav +e+rvHiiD+di++G+QW++L+qaL sR+ +pp+lRiT+++ p sg s +++etg+rL
Lsa007846 44 QHHHRDDILAAFQLLQDMSPYVKFGHFTANQAIIEAVTHERRVHIIDYDIMEGIQWASLMQALISRKdgPPPPHLRITALSLPGSGrrSISTVQETGRRL 143
345688999**********************************************************533356*********999999999********* PP
GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
fA+++g pf+f+ + e++++ +L++ +gEa+++n++l+l ++ +s+++ ++L+ k+l+Pk+v++ve+e + ++ F+ rf+++l+ ys
Lsa007846 144 VAFAASIGQPFSFHQCKLDPNETFKPTSLKLVRGEAIVINCMLHLPHFSYRSHTSVA---TFLSGSKTLNPKLVTLVEEEGPRVDGGFVGRFMDTLHNYS 240
***************9999*****************************988888888...9*************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkd 364
a++dslea++p + + r+ vEr++lg++i +a +e + + ++W ++l +aG+++ ++s + +qaklll ++ dgyrvee+ + lvlgWk+
Lsa007846 241 AVYDSLEAGFPMQGKSRALVERVFLGPRILGSLARVYRE----EGECGSWADWLLAAGYHQGNISFANHCQAKLLLGLFN-DGYRVEESgCNKLVLGWKS 335
**************************************9....7779*********************************.******99679999***** PP
GRAS 365 rpLvsvSaWr 374
r+L+s+S W+
Lsa007846 336 RRLLSASIWT 345
*********6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
XIWCPQMKAL IWRGSPPISP TRYIHWLESN GGGGGGGGLH YKQQHHHRDD ILAAFQLLQD 60
MSPYVKFGHF TANQAIIEAV THERRVHIID YDIMEGIQWA SLMQALISRK DGPPPPHLRI 120
TALSLPGSGR RSISTVQETG RRLVAFAASI GQPFSFHQCK LDPNETFKPT SLKLVRGEAI 180
VINCMLHLPH FSYRSHTSVA TFLSGSKTLN PKLVTLVEEE GPRVDGGFVG RFMDTLHNYS 240
AVYDSLEAGF PMQGKSRALV ERVFLGPRIL GSLARVYREE GECGSWADWL LAAGYHQGNI 300
SFANHCQAKL LLGLFNDGYR VEESGCNKLV LGWKSRRLLS ASIWTATQSD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
