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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lsa007740 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | TCP | ||||||||
| Protein Properties | Length: 161aa MW: 18705.6 Da PI: 7.7009 | ||||||||
| Description | TCP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | TCP | 87.7 | 2.7e-27 | 106 | 159 | 2 | 55 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqa 55
+ kkd hski+T++g+RdRRvRls+e+ ++fF Lqd LGfdk+s+t++WL++++
Lsa007740 106 TSKKDGHSKIYTARGPRDRRVRLSIEISRKFFCLQDLLGFDKPSQTLDWLFTKS 159
78**************************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03634 | 3.1E-26 | 106 | 159 | IPR005333 | Transcription factor, TCP |
| PROSITE profile | PS51369 | 28.271 | 108 | 161 | IPR017887 | Transcription factor TCP subgroup |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 161 aa Download sequence Send to blast |
MHSSNPFPQL PSSTVGFSHP NFFFYHEKDD VQYNYHRKND DPFISSDFLF HPYNSSTPPA 60 VMENVTTIKQ DFVRQQQFSE GSGLQCSEDH DLLDSVISPY NKRLATSKKD GHSKIYTARG 120 PRDRRVRLSI EISRKFFCLQ DLLGFDKPSQ TLDWLFTKSL X |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023746527.1 | 1e-116 | transcription factor CYCLOIDEA-like | ||||
| TrEMBL | A0A2J6MA45 | 1e-115 | A0A2J6MA45_LACSA; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G68800.1 | 7e-22 | TCP domain protein 12 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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