PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa007589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | C3H | ||||||||
Protein Properties | Length: 219aa MW: 24725.8 Da PI: 8.8348 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.3e-11 | 39 | 63 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C+ f++ G C+ Gd+C+FaHg Lsa007589 39 YKTRICQKFLE-GNCRNGDSCTFAHG 63 9**********.*************8 PP | |||||||
2 | zf-CCCH | 31.2 | 3.8e-10 | 96 | 118 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f tG+C+yG++C+F H Lsa007589 96 MRICHKFVNTGECPYGEKCNFLH 118 689******************** PP | |||||||
3 | zf-CCCH | 40.7 | 4e-13 | 179 | 204 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C +Gd+C+FaHg Lsa007589 179 WKTRICSKWETTGQCVFGDKCHFAHG 204 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-15 | 34 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-9 | 35 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-7 | 38 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.633 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.9E-9 | 39 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-7 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-9 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-8 | 96 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 98 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-16 | 174 | 210 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-10 | 176 | 210 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-7 | 178 | 205 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 179 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MLQHPVLGGN NGGGEVNTNP QKSTPLLPPI NRGTTHIFYK TRICQKFLEG NCRNGDSCTF 60 AHGSKDLREP PPNWPDLVKD NRGQNWNDDQ RIIHQMRICH KFVNTGECPY GEKCNFLHES 120 PSKFKAQTER TRDSSVIKIQ TMVDRGQPNG SQQRLHNNIN NMNPIKVTTL SSDPNATFWK 180 TRICSKWETT GQCVFGDKCH FAHGLSELNT PVARVEVQG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023757634.1 | 1e-165 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A2J6LRX6 | 1e-163 | A0A2J6LRX6_LACSA; Uncharacterized protein | ||||
STRING | Solyc11g070070.1.1 | 3e-72 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-57 | C3H family protein |