PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007512

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 274aa MW: 29172.9 Da PI: 7.2422

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58675577	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.9	9.3e-31	2	86	20	89
TCP 20 RRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..............k 89 RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s+g + Lsa007512 2 RRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAGhtsylrngfsfvtsQ 86 9**************************************************9998777777777766555445555444444330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.898	1	44	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.5E-31	2	99	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
XRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS 60 LRSSGSTMSA GHTSYLRNGF SFVTSQPMSQ YLNFSTSAVK QDSSSCLDLR SIPMGVASSY 120 MMQSSSGSIP ASNTQTPPPT SFLMMGNPNT NTTTTTSSHA ITGDPTWNFP SNSNHITNNN 180 TTNDDHAYRG GLGSNISNGG GLHFMNFGTP MSLFQGQQYG GGTVAPTEGH LGMLTALSPF 240 RPIFSMGASD HLLSGLNPHD RGHDHHETSS SHHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747903.1	0.0	transcription factor TCP15-like
TrEMBL	A0A2J6JJW8	0.0	A0A2J6JJW8_LACSA; Uncharacterized protein
STRING	VIT_01s0026g02200.t01	5e-63	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-37	TCP family protein