PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007289
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 286aa    MW: 32217.3 Da    PI: 10.5306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-54619PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20157207155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +grW+AeIrdp   ++rkr++lg+f+++eeAa  ++ a+ kl+g
  Lsa007289 157 KKFRGVRRRP-WGRWAAEIRDP---NRRKRVWLGTFDSPEEAATVYDDAAVKLKG 207
                59********.**********8...335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.97E-31157215No hitNo description
PfamPF008473.0E-13158207IPR001471AP2/ERF domain
SMARTSM003808.4E-36158221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-30158216IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-22158216IPR016177DNA-binding domain
PROSITE profilePS5103224.157158215IPR001471AP2/ERF domain
PRINTSPR003672.3E-9159170IPR001471AP2/ERF domain
PRINTSPR003672.3E-9181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
XDNLAPWITS FFHPSRKNWR ETFPPKNQST SALTPLILLP NIVDRLCRHK LRALSSTDLI  60
NFDRRFDMEV DRTMSVRSAV KFSEHVVTTS KLLHRDPPAS SIKQRIVRIT LTDPYTTDSS  120
SEDEEQVIKR VKKHVSVIEF STPSLKFNKR SSGSAEKKFR GVRRRPWGRW AAEIRDPNRR  180
KRVWLGTFDS PEEAATVYDD AAVKLKGPAA VTNFPRVTVT KTVTVDKQSL TTTTTTTTSS  240
SGSEGVLNNT AMSPTSVLRG NAEQTPFDRL DCLDMESLGF GIDMPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-21150215672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162181RRRPWGRWAAEIRDPNRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023738677.11e-154pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046823e-48PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2J6K4K21e-152A0A2J6K4K2_LACSA; Uncharacterized protein
STRINGVIT_06s0004g08190.t015e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-34cytokinin response factor 1