PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007038
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 158aa    MW: 17417.5 Da    PI: 10.3287
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675784PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-32472PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.67.4e-1585145161
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                +ke kr +r+ +NR++A+  R+RKka++ eLe +vke+e++N++L ++l++l++e + l+ 
  Lsa007038  85 DKENKRLKRLLRNRVSAQQARERKKAYLNELEVRVKEIEKKNSELEERLSTLQNENQMLRH 145
                5899****************************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.5E-1682149No hitNo description
SMARTSM003388.9E-1385149IPR004827Basic-leucine zipper domain
PfamPF001704.5E-1486146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.59987150IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-1289147No hitNo description
CDDcd147044.06E-1790141No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MQEPTATSSL VASLPSSSER SSSSALHIEI KEGMESDDEI RRVPEMGGEA AGASVSGGDT  60
GSGAGPDRVQ SSNVGSRKRG RTPADKENKR LKRLLRNRVS AQQARERKKA YLNELEVRVK  120
EIEKKNSELE ERLSTLQNEN QMLRHILKNT TAGMQEKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A3e-16110149342Transcription factor HY5
2oqq_B3e-16110149342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759627.11e-109transcription factor HY5-like
SwissprotQ9SM502e-65HY5_SOLLC; Transcription factor HY5
TrEMBLA0A2J6LMY01e-108A0A2J6LMY0_LACSA; Uncharacterized protein
STRINGXP_008445197.11e-71(Cucumis melo)
STRINGXP_004138731.11e-71(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-47bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]