PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa007009 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||||||
Family | AP2 | ||||||||||||
Protein Properties | Length: 460aa MW: 51321 Da PI: 6.677 | ||||||||||||
Description | AP2 family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.1e-16 | 177 | 226 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+ +lg f+t Aa+a+++a+ k++g Lsa007009 177 SQYRGVTFYRRTGRWESHIWD------CgKQLYLGGFDTSHAAARAYDRAAIKFRG 226 78*******************......55*************************98 PP | |||||||
2 | AP2 | 40.6 | 6.5e-13 | 269 | 319 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+ + eAa+a+++a+ k+ g Lsa007009 269 SRYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEVEAARAYDKAAIKYSG 319 79********.7******...5...334336**********99************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.47E-13 | 177 | 236 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-15 | 177 | 235 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.2E-9 | 177 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-17 | 178 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.767 | 178 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-32 | 178 | 240 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.32E-23 | 269 | 329 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-16 | 269 | 328 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-8 | 269 | 319 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 270 | 327 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.857 | 270 | 327 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-28 | 270 | 333 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 271 | 282 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 309 | 329 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 460 aa Download sequence Send to blast |
MREGLKMFDL NVDVALSVVD TSTKCDRNGC ATNGDIAVKK KEQEDRQSGI HSGTSVSSDV 60 LNVTVDVDVD DEDSVSYTAL HKQACHIVSQ TGESMENSNR ASAGLITRQF FPVASYLELE 120 EELRSGLITS SPSTISFLGA DWLNLKVPES APVPVNVKAL PPQKVRKTRR GPPSKSSQYR 180 GVTFYRRTGR WESHIWDCGK QLYLGGFDTS HAAARAYDRA AIKFRGNDAD INFDLSDYEE 240 DMAQTKNLSK EEFIQILRRQ SNGFSRGSSR YRGVTLHKCG RWEARMGQLL GKKYVYLGLF 300 DNEVEAARAY DKAAIKYSGR EAITNFEPST YGADIIDLDQ ASGENLDLNL WISPTPTLST 360 WNGNQNVENA DMGFTAASGK RQKVGGQYQY QYQSQSQSHY SALCTPNYEE MTKGISSASV 420 VPSTAAWQRQ MQMQMQQHHQ DSLLLLQSSQ TSFYSYPTHT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023740230.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Refseq | XP_023740231.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AMA9 | 2e-94 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | A0A2J6K1E0 | 0.0 | A0A2J6K1E0_LACSA; Uncharacterized protein | ||||
STRING | XP_008463879.1 | 1e-107 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-87 | related to AP2.7 |