PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006968
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 223aa    MW: 24424 Da    PI: 4.8469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676079PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-182373155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Lsa006968 23 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 73
               59*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-192380No hitNo description
PROSITE profilePS5103221.2462481IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-202482IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-292482IPR001471AP2/ERF domain
SMARTSM003804.3E-352487IPR001471AP2/ERF domain
PfamPF008471.1E-112473IPR001471AP2/ERF domain
PRINTSPR003671.5E-82536IPR001471AP2/ERF domain
PRINTSPR003671.5E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVKKEVKVEN ELSRTSSSMI SKKKYKGVRM RSWGSWVSEI RAPNQKTRIW LGSYSTPEAA  60
ARAYDAALLC LKGPTANLNF SHTQYDHDYS TTIMSPKSIQ KIAAAAAAST TATTTPSSPV  120
PSYPSPSPSS SPSPSYSSSV SYNTSTPPTT NPTEEDDAFF SANDPLDGTL MSLVAPWYNF  180
GSPAYDDVMF DTSFFELDQS SSTITKDVCE EESGDIYLWS FCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1324821473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756418.11e-163ethylene-responsive transcription factor ERF014-like
TrEMBLA0A103YCW02e-88A0A103YCW0_CYNCS; AP2/ERF domain-containing protein
STRINGGorai.010G048900.14e-46(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.17e-31ERF family protein