PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006833

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C3H

Protein Properties

Length: 348aa MW: 39003.8 Da PI: 7.1136

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686275	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-53563	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	134	155	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C FaHg Lsa006833 134 NPCSEFRK-GSCVKGDLCEFAHG 155 59****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0014	130	156	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.573	131	157	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-4	134	157	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	15	165	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.362	165	189	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MVITGRETLN LHQSVGGAGN HPWEMILEVP SANAFLPFSG SSMNDDGSAM FEELTTMQLH 60 HLLSNVEMAE YGDHAYEVGE ECGDVQMDDQ FCMYEFKVKR CARGRSHDWT DCPYTHPGEK 120 ARRRDPRKFH YSGNPCSEFR KGSCVKGDLC EFAHGVFECW LHPSRYRTQP CKDGVQCRRR 180 ICFFAHTPEQ LRILPPSHHV STHSNRHDSY DGSPRRLVTD SHFGSSPTST LYFPHCSTPT 240 DSPPMSPVSS LGPNPFADLA SSMRNLQIGK ARRLGMSLMN GSPYSSPHIP YAVRPTPSRP 300 SLKALEVWEE GGATEERMME RVESGKGVRA QIYAKLSREN SLSESCGV

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MVITGRETLN LHQSVGGAGN HPWEMILEVP SANAFLPFSG SSMNDDGSAM FEELTTMQLH  60
HLLSNVEMAE YGDHAYEVGE ECGDVQMDDQ FCMYEFKVKR CARGRSHDWT DCPYTHPGEK  120
ARRRDPRKFH YSGNPCSEFR KGSCVKGDLC EFAHGVFECW LHPSRYRTQP CKDGVQCRRR  180
ICFFAHTPEQ LRILPPSHHV STHSNRHDSY DGSPRRLVTD SHFGSSPTST LYFPHCSTPT  240
DSPPMSPVSS LGPNPFADLA SSMRNLQIGK ARRLGMSLMN GSPYSSPHIP YAVRPTPSRP  300
SLKALEVWEE GGATEERMME RVESGKGVRA QIYAKLSREN SLSESCGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023757596.1	0.0	zinc finger CCCH domain-containing protein 23-like isoform X1
Swissprot	Q6L4N4	2e-77	C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBL	A0A2J6LRX4	0.0	A0A2J6LRX4_LACSA; Uncharacterized protein
STRING	XP_010086901.1	5e-96	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	6e-79	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]