PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006789
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 259aa    MW: 29098 Da    PI: 9.2449
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679416PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-36921PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18192225134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C  tkTp+WR+gp g+ktLCnaCG++yr+ +
  Lsa006789 192 CAHCEITKTPQWREGPMGPKTLCNACGVRYRSGR 225
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.8E-17186236IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.161190222IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15191249No hitNo description
Gene3DG3DSA:3.30.50.107.8E-15191223IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.39E-15191238No hitNo description
PfamPF003201.5E-16192225IPR000679Zinc finger, GATA-type
PROSITE patternPS003440192217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRGFAMESQ DKRMCKTESA FSGVSVDYNQ NQNHRVYDED CFGDILNMFD FPMEGLEGDG  60
FAEDWASKLG PIPSEVFKEL GVSNTFVPST DLPFEYPVLN NRALHSQPKE AFEAPSPNSV  120
LENRSSSSNS KPISLGIEHS IPVRSRSKRF RPTSNPWLLS PLISKEKKRK TASEIPVFIK  180
RSNVTGNGIK KCAHCEITKT PQWREGPMGP KTLCNACGVR YRSGRLFPEY RPAASPTFVP  240
ALHSNSHRKV IEMRNKTVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751543.10.0GATA transcription factor 11-like
SwissprotQ6DBP81e-44GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A2J6M5920.0A0A2J6M592_LACSA; Uncharacterized protein
STRINGXP_009621793.19e-64(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-41GATA transcription factor 11