PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006697

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

YABBY

Protein Properties

Length: 210aa MW: 23456.5 Da PI: 8.8262

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-12141	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	225	2e-69	8	177	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.lleelkveeenlksnvekeesastsvssek 100 dv +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ +a+ + s+ + s ++ +++++++ +++ n+ + + s+s+ +++ Lsa006697 8 DVAAASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMGMAAAFHQSFSNSNSSSQDCtSHHQHGQAPNHTPPNY-RVDLGSASKYNNR 106 57789*********************************************9888888886666665523344444444444443.3344444444444 PP YABBY 101 l.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++ p+++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Lsa006697 107 MpMRPSPTSITNDPKINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 177 413445567777899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.1E-69	12	177	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-8	119	170	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	124	171	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSSSSCIDVA AASEQLCYIP CNFCNIVLAV SVPCSSLFDI VTVRCGHCTN LWSVNMGMAA 60 AFHQSFSNSN SSSQDCTSHH QHGQAPNHTP PNYRVDLGSA SKYNNRMPMR PSPTSITNDP 120 KINRPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE 180 ANNHQAKLDE LSCVQGSEKR LRSRTALFKK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023762972.1	1e-157	axial regulator YABBY 5-like
Swissprot	Q8GW46	3e-79	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A251TQZ4	1e-135	A0A251TQZ4_HELAN; Putative plant-specific transcription factor YABBY family protein
STRING	VIT_11s0016g05590.t01	7e-96	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-80	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]