PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa006636 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 146aa MW: 16561.1 Da PI: 9.993 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.2 | 4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g+lKKA+EL vLCda+va+i+fs tgkl+eyss Lsa006636 9 KKIDNITARQVTFSKRRRGLLKKAQELAVLCDADVALIVFSATGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 28.7 | 5.6e-11 | 98 | 146 | 46 | 94 |
K-box 46 LslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++ +eL++Le+ Le +l+++ ++K+e + ++i++lq+k +l een+ L Lsa006636 98 INQEELEHLETVLEGGLSRVLQTKDEKFGNEISRLQEKGAKLMEENRLL 146 6789******************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.66 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-31 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.46E-32 | 12 | 75 | No hit | No description |
PRINTS | PR00404 | 4.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.604 | 55 | 146 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.2E-8 | 96 | 146 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MAREKIKIKK IDNITARQVT FSKRRRGLLK KAQELAVLCD ADVALIVFSA TGKLFEYSSS 60 SMQEMLGKYK LHSSNNRDKV DDPSLNLEAV KRPRASGINQ EELEHLETVL EGGLSRVLQT 120 KDEKFGNEIS RLQEKGAKLM EENRLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-21 | 1 | 97 | 1 | 95 | MEF2 CHIMERA |
6bz1_B | 1e-21 | 1 | 97 | 1 | 95 | MEF2 CHIMERA |
6bz1_C | 1e-21 | 1 | 97 | 1 | 95 | MEF2 CHIMERA |
6bz1_D | 1e-21 | 1 | 97 | 1 | 95 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023735759.1 | 4e-81 | MADS-box protein JOINTLESS-like | ||||
Swissprot | Q9FUY6 | 9e-52 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A2U1NGV5 | 2e-67 | A0A2U1NGV5_ARTAN; AGAMOUS-like 24 | ||||
STRING | EOY15444 | 1e-55 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-54 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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