PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa006001 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ARF | ||||||||||||
Protein Properties | Length: 609aa MW: 67631.3 Da PI: 7.3886 | ||||||||||||
Description | ARF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.6 | 1.2e-23 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L gD v+F + +++ l++ Lsa006001 156 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFL--RGDDGVLRL 252 99****************************963.3445679************************************************..347888899 PP EEE-S CS B3 95 kvfrk 99 +++r+ Lsa006001 253 GIRRS 257 99985 PP | |||||||
2 | Auxin_resp | 93.3 | 4.1e-31 | 280 | 366 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPras....tseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++++s+++vF+v YnP as seF+ ++++++k+l +k+s+GmRf ++feted+ er+ +G+++g+sd+dpv+Wp+SkW++L Lsa006001 280 VVNSISQRTVFNVSYNPTASftggVSEFILPYHRFLKSLLpNKFSPGMRFNLRFETEDAGERKSTGMITGISDVDPVKWPGSKWKCL 366 6899**************97444469************988*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-42 | 150 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-40 | 151 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.02E-23 | 154 | 256 | No hit | No description |
PROSITE profile | PS50863 | 13.084 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-22 | 156 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-22 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.4E-25 | 281 | 366 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MCGLIDLNTI NDDTDEVAGS LVLDSPSSSD SYASPASELS LLSSSPVLCS LELWHACAGP 60 LISLPKKGNA VVYFPQGHLE QLRIYDSPAI SGVHLPPHVF CRVTDVKLHA ELGSDDVYAQ 120 VSLIPDVQLE KKWGETEVEE DDNGGLDEKP STPHMFCKTL TASDTSTHGG FSVPRRAAED 180 CFPPLDYKQQ RPSQELVAKD LHGTEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVCGDAV 240 LFLRGDDGVL RLGIRRSAQV KTAPCFPATY RHQLNDFTTV VNSISQRTVF NVSYNPTASF 300 TGGVSEFILP YHRFLKSLLP NKFSPGMRFN LRFETEDAGE RKSTGMITGI SDVDPVKWPG 360 SKWKCLMVRW DGVEATTRQN RVSPWEIERS NLVSGADSNL SPMAKRIKTS FPPIFHVPKD 420 VASGGGASDF EKSMRFQKVL QGQEIFGYNH ISSLRNNLSN LIGIGYSNPF QFNEVLQGQE 480 IFSKPQFGHS PIPPYKNAIP QHPFSNPIHI SHNLKAPNFP RPYFGHHNSH NQHAPSEIGQ 540 QESVSKCKDS CRLFGFSLTE GLTQPATSYV KKGSLLVDAE EHVNSKRHHE QTEAWGAFSM 600 AGIGNVVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-102 | 45 | 391 | 16 | 356 | Auxin response factor 1 |
4ldw_A | 1e-102 | 45 | 391 | 16 | 356 | Auxin response factor 1 |
4ldw_B | 1e-102 | 45 | 391 | 16 | 356 | Auxin response factor 1 |
4ldy_A | 1e-102 | 45 | 391 | 16 | 356 | Auxin response factor 1 |
4ldy_B | 1e-102 | 45 | 391 | 16 | 356 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023746845.1 | 0.0 | auxin response factor 3-like isoform X1 | ||||
Swissprot | O23661 | 1e-171 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2J6JMC0 | 0.0 | A0A2J6JMC0_LACSA; Auxin response factor | ||||
STRING | Migut.M01096.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-168 | ARF family protein |