PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005596

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 159aa MW: 17891.9 Da PI: 10.4704

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58669480	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.5	8.9e-16	86	146	1	61
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++e+kr +r+ +NR++A+ R+RKka++ eLe +vkeLe++N++L ++l+++++e + l+ Lsa005596 86 DRESKRLKRLLRNRVSAQQARERKKAYMTELESRVKELEKKNSELEERLSTMQNENQMLRH 146 589****************************************************998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	7.2E-5	85	101	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	1.8E-14	86	150	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-15	87	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.76	88	151	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-13	90	148	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.6E-17	90	150	No hit	No description
CDD	cd14704	7.81E-15	91	142	No hit	No description
PROSITE pattern	PS00036	0	93	108	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	7.2E-5	103	123	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	7.2E-5	123	140	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MQEQAATSSM AASLPSSSER SSSSALQIEI KEGMESDDEI RRVPDMGGEA AGASRSGRET 60 GSNQNNPDRV QHSAEGTKKR GKTPADRESK RLKRLLRNRV SAQQARERKK AYMTELESRV 120 KELEKKNSEL EERLSTMQNE NQMLRHILKN TTSGMQERK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2oqq_A	5e-17	111	150	3	42	Transcription factor HY5
2oqq_B	5e-17	111	150	3	42	Transcription factor HY5
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735281.1	1e-110	transcription factor HY5-like
Swissprot	Q9SM50	7e-62	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A2J6KC74	1e-109	A0A2J6KC74_LACSA; Transcription factor HY5-like protein
STRING	XP_008219477.1	2e-66	(Prunus mume)
STRING	EMJ28723	3e-66	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	2e-40	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]