PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005473
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 249aa    MW: 27164.5 Da    PI: 8.4365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-48181PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-162877255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +g  +AeIrdp   gk+ r++lg+f+taeeAa+a++aa ++++g
  Lsa005473 28 HFRGVRKRP-WGEIAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAATREFRG 77
               69*******.**********8...557**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.70E-302786No hitNo description
Gene3DG3DSA:3.30.730.105.5E-302885IPR001471AP2/ERF domain
PROSITE profilePS5103222.5632885IPR001471AP2/ERF domain
PfamPF008471.3E-102877IPR001471AP2/ERF domain
SMARTSM003801.3E-322891IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-202886IPR016177DNA-binding domain
PRINTSPR003675.0E-102940IPR001471AP2/ERF domain
PRINTSPR003675.0E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSPRERTPAV VKANAADSGV GPLVREAHFR GVRKRPWGEI AAEIRDPGKK SRVWLGTFDT  60
AEEAARAYDA ATREFRGAKA KTNFPVYEDN CLLKVENDEL FKKANLVSQQ STSQGSTVES  120
AGREAESVVP SLDLNLSYGV PAPSVVQFPF HQKNLYRFPP PAGTVTGFFS PQSSQMFYFD  180
GIFLSGQVQV HHSGGYDRPP VLFRPSASVA RSDDSNSSSV IDLKPLPTPA PQPQPQRIAI  240
DLNLPPPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-202886261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-202886564ATERF1
3gcc_A9e-202886564ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736730.11e-180ethylene-responsive transcription factor 9-like
TrEMBLA0A2J6K9741e-179A0A2J6K974_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-23erf domain protein 9