PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005467
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 279aa    MW: 31483.5 Da    PI: 9.3618
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678630PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17214248135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C +  Tp+WR gp+g+ktLCnaCG++y++ +l
  Lsa005467 214 CRHCLSQRTPQWRAGPEGPKTLCNACGVRYKSGRL 248
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-15208258IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.123208244IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-14209271No hitNo description
Gene3DG3DSA:3.30.50.107.9E-14209245IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.13E-10213260No hitNo description
PfamPF003202.7E-15214248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
XPKKIVLWSS SFFLRKESMN ICRNISVSGG IPANYKPEQQ LLSPSCSKLG SLDDLFSGHS  60
MEEGDFNTEW LSIFVEECLS SSGSYMPLNP QSTTSNAQVT NTTTAETEVK MKMKMKPHSG  120
NYLSMHKLVV PCKARSKRKR KSTSRLCMSQ EEYPMNTDPP LLHQAYWLAD SELILPNKGT  180
SDNSTRSEDY GQGRYKEMKH EEEEGSSGGQ GRRCRHCLSQ RTPQWRAGPE GPKTLCNACG  240
VRYKSGRLLP EYRPAKSPSF VSYKHSNSHK KVLEMRMCS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745112.10.0GATA transcription factor 9-like
TrEMBLA0A2J6MA620.0A0A2J6MA62_LACSA; Uncharacterized protein
STRINGXP_010257696.16e-84(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-33GATA transcription factor 1