PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005230

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C3H

Protein Properties

Length: 360aa MW: 40077.9 Da PI: 6.4182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-4245	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	134	154	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd C FaHg Lsa005230 134 ACPEFRK-GNCKKGDGCEFAHG 154 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.183	86	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.375	129	156	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-5	129	155	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-5	134	156	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-4	134	154	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.01	164	188	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.1	164	187	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MVGDGNQHGM MVHVPPWTLM DDSVAGVSPF SPRSPNATVN SLSSIEDYAY FLRNDAALRR 60 YLEEDLDGDG SGSGCTDFDI TSEAYACDSF RMYEFKVRKC ARGRSHDWTD CPYAHPAEKA 120 RRRDPRRYSY SGTACPEFRK GNCKKGDGCE FAHGVFECWL HPSRYRTQPC KDGINCRRRV 180 CFFAHTPEQL RVLSPHTDSH DGTSLKGFPP FFSSPSETST PPSESPPMSP MDSSLSRSLG 240 SVSVNDMLSS LRRLQLNNKT PSMSTAWSLQ MGMTLPSPRS GFYSLPSTPT RPVPRPGLGF 300 SDIWEEGCVE EEPAMERVES GRGLRVKMFE KLSKENLVGV DPNPEEGSNP DVGWVSELVK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MVGDGNQHGM MVHVPPWTLM DDSVAGVSPF SPRSPNATVN SLSSIEDYAY FLRNDAALRR  60
YLEEDLDGDG SGSGCTDFDI TSEAYACDSF RMYEFKVRKC ARGRSHDWTD CPYAHPAEKA  120
RRRDPRRYSY SGTACPEFRK GNCKKGDGCE FAHGVFECWL HPSRYRTQPC KDGINCRRRV  180
CFFAHTPEQL RVLSPHTDSH DGTSLKGFPP FFSSPSETST PPSESPPMSP MDSSLSRSLG  240
SVSVNDMLSS LRRLQLNNKT PSMSTAWSLQ MGMTLPSPRS GFYSLPSTPT RPVPRPGLGF  300
SDIWEEGCVE EEPAMERVES GRGLRVKMFE KLSKENLVGV DPNPEEGSNP DVGWVSELVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023769821.1	0.0	zinc finger CCCH domain-containing protein 20
Swissprot	O82199	1e-108	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A2J6L0S0	0.0	A0A2J6L0S0_LACSA; Uncharacterized protein
STRING	XP_009791791.1	1e-143	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-108	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]