PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005052

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 577aa MW: 62470.8 Da PI: 4.6647

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-39725	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	408.6	5.8e-125	195	543	1	350
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaN 99 lv++L++cAeav+++dl+la++l+++ la +++ +m+++a+yf+eALa+r++r ly p++ +++ ++ + f+e++P+lkf+h+taN Lsa005052 195 LVHTLMACAEAVQQDDLKLAETLVKQAGILAVSQAGAMRKVATYFAEALARRIYR----LY----PKTPQDSPaFQDL--LQMHFYETCPYLKFAHFTAN 284 689**************************************************....44....3333322203333..3335************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 qaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ ++a++l+dle+++L+++++ Lsa005052 285 QAILEAFAGKKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFLAESLADLEPSMLDLRED 384 ************************************************99****************************************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...........lpreseerikvEre 288 E++aVn+v++lh+ll++++++e+ vL++vk+++P++++vveqea+hn++ Flerf+e+l+yys+lfdsle++ +p++s++++ ++++ Lsa005052 385 EVVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPEILTVVEQEANHNGPVFLERFTESLHYYSTLFDSLESSgngggvvegggIPAASNQDKIMSEV 480 *******************....*****************************************9999******************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 +lg++i+nvvaceg +r+erh+tl++W+ r+e+ GF++v+l+++a+kqa++ll+ ++ +dgy Lsa005052 481 YLGKQICNVVACEGPDRVERHQTLSQWKTRFESGGFEAVHLGSNAYKQASMLLALFAgGDGYX 543 *******************************************************999995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	5.7E-34	54	125	No hit	No description
Pfam	PF12041	9.6E-32	54	119	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	65.501	169	546	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-122	195	543	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MKREYPQQDY TFFNGGSSTS ASASTAAASG SGFSDVTGKS KMWDEVEEQD AGVDELLAVL 60 GYKVKSSDMA DVAQKIEHLE GVLGNDDGLS QLASDSVHYN PSDLSSWLES MICELNPTNQ 120 PTVIDDSFVN NTSSVTPSAV DSSSVFVDDL QRIPGNAIYP PAKKQKPSSP STGASSSYNP 180 NPIVLVDTQE NGIRLVHTLM ACAEAVQQDD LKLAETLVKQ AGILAVSQAG AMRKVATYFA 240 EALARRIYRL YPKTPQDSPA FQDLLQMHFY ETCPYLKFAH FTANQAILEA FAGKKKVHVI 300 DFSMKQGMQW PALMQALALR PGGPPTFRLT GIGPPSGDNT DHLQEVGWKL AQLADTIHVE 360 FEYRGFLAES LADLEPSMLD LREDEVVAVN SVFELHQLLA RPGAVEKVLS AVKEMKPEIL 420 TVVEQEANHN GPVFLERFTE SLHYYSTLFD SLESSGNGGG VVEGGGIPAA SNQDKIMSEV 480 YLGKQICNVV ACEGPDRVER HQTLSQWKTR FESGGFEAVH LGSNAYKQAS MLLALFAGGD 540 GYXGGGKQRL FDVGLAYTAT NHDIGVEAPV NSTGSTR

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MKREYPQQDY TFFNGGSSTS ASASTAAASG SGFSDVTGKS KMWDEVEEQD AGVDELLAVL  60
GYKVKSSDMA DVAQKIEHLE GVLGNDDGLS QLASDSVHYN PSDLSSWLES MICELNPTNQ  120
PTVIDDSFVN NTSSVTPSAV DSSSVFVDDL QRIPGNAIYP PAKKQKPSSP STGASSSYNP  180
NPIVLVDTQE NGIRLVHTLM ACAEAVQQDD LKLAETLVKQ AGILAVSQAG AMRKVATYFA  240
EALARRIYRL YPKTPQDSPA FQDLLQMHFY ETCPYLKFAH FTANQAILEA FAGKKKVHVI  300
DFSMKQGMQW PALMQALALR PGGPPTFRLT GIGPPSGDNT DHLQEVGWKL AQLADTIHVE  360
FEYRGFLAES LADLEPSMLD LREDEVVAVN SVFELHQLLA RPGAVEKVLS AVKEMKPEIL  420
TVVEQEANHN GPVFLERFTE SLHYYSTLFD SLESSGNGGG VVEGGGIPAA SNQDKIMSEV  480
YLGKQICNVV ACEGPDRVER HQTLSQWKTR FESGGFEAVH LGSNAYKQAS MLLALFAGGD  540
GYXGGGKQRL FDVGLAYTAT NHDIGVEAPV NSTGSTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-59	190	542	14	354	Protein SCARECROW
5b3h_A	3e-59	190	542	13	353	Protein SCARECROW
5b3h_D	3e-59	190	542	13	353	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733606.1	0.0	DELLA protein GAI1-like
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	A0A2J6KFZ2	0.0	A0A2J6KFZ2_LACSA; Uncharacterized protein
STRING	VIT_01s0011g05260.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein