PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004939
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 486aa    MW: 54598 Da    PI: 6.6891
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-14414PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-09242262526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f + G+C++Gd C FaHg
  Lsa004939 242 PCPDFKK-GQCRRGDLCEFAHG 262
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.6E-1054127IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.2E-1557137IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00795989IPR002110Ankyrin repeat
CDDcd002044.09E-1459137No hitNo description
PROSITE profilePS5029715.93759167IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1560137IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0294126IPR002110Ankyrin repeat
PROSITE profilePS5008811.19494129IPR002110Ankyrin repeat
SMARTSM003566.6E-6237263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5241264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619242264IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6242262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4270300IPR000571Zinc finger, CCCH-type
SMARTSM0035626272295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNDSIKIIRP DSSFSNLLEL AANNDVDGCK QSITRIPSAI NEVGLWYGRQ RSSKRMLMEH  60
RTPLMIAATY GSLDVVKLIL SFTEVDVNSS CGLDKTTALH CAASGGSSNA FDVIKILLIS  120
GADPDLVDAD GRRPVDVLLV PPNLPNLKIS LEKLLKNDGF WVEQEDDFTC FKSNEKKEYP  180
IDPFFPDLKS DAYSTDEFRM FAFKNRPCSR AYSHDWTECP FIHPGESARR RDPRKIHYSC  240
VPCPDFKKGQ CRRGDLCEFA HGVFECWLHP AQYRTRLCKD GTFCARRVCF FAHTPEELRP  300
LYVSTGSAMP SPRSSPAAAS TMSPPFSPPP MLQLHGGNLQ ASRLRLSFNA RDVHAEELKL  360
LLDLEMHQRQ QAAVNLFSPV NTFSPKGYEY WGSPRGMEQQ QPHLPPFSPQ FSKWDYAKKV  420
DWSVNGGEQA PARRLQVTEP DVSWVQSLVK EPPPPVAAVE PPETEKNDHA ALGAWLENMQ  480
LDQIVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751496.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-166C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2J6M5A40.0A0A2J6M5A4_LACSA; Uncharacterized protein
STRINGXP_002526718.11e-174(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-149CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]