PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004104

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 400aa MW: 44670.9 Da PI: 6.2867

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689047	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-3208	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.2e-05	290	327	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L Lsa004104 290 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKLL 327 677888999*****998.....8**************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.846	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-5	288	331	No hit	No description
SuperFamily	SSF47459	4.84E-11	288	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-7	292	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MAEDFQATVC SGSWWMSPRS NFSRSWCSSV LSDMDNFGPF MSRDLIMDMK SKSSDNKSSD 60 GSMIFHDIQK PSGIMSPDSA LQFMATTFSS SPPATTTDHW NQNLLLKVQE ELNTFPTSGD 120 HDDSTAVTEA DRHQDFTMDQ QQSFNSTTTF PVSSTSYEAY PSTLLQSFLD NNSPPPPPPP 180 PLQQLHQQPP YTFQPNSNDL NFIPKQHVPA FWNASGSTLD DNISSYFSSL SSQFLPSSYK 240 EKESRPNLII KRNHQEIRDM GSSAKKCSGE LPLKRPRLET PSPLPTFKVR KEKLGDRITA 300 LQQLVSPFGK TDTASVLHEA IDYIKLLHDQ VNILSAPYIK NGATKQLQQI DHDQKVKNAE 360 VHKQDLRSLG LCLVPVSSTF PVANGTATGF WTPSYEGSFR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MAEDFQATVC SGSWWMSPRS NFSRSWCSSV LSDMDNFGPF MSRDLIMDMK SKSSDNKSSD  60
GSMIFHDIQK PSGIMSPDSA LQFMATTFSS SPPATTTDHW NQNLLLKVQE ELNTFPTSGD  120
HDDSTAVTEA DRHQDFTMDQ QQSFNSTTTF PVSSTSYEAY PSTLLQSFLD NNSPPPPPPP  180
PLQQLHQQPP YTFQPNSNDL NFIPKQHVPA FWNASGSTLD DNISSYFSSL SSQFLPSSYK  240
EKESRPNLII KRNHQEIRDM GSSAKKCSGE LPLKRPRLET PSPLPTFKVR KEKLGDRITA  300
LQQLVSPFGK TDTASVLHEA IDYIKLLHDQ VNILSAPYIK NGATKQLQQI DHDQKVKNAE  360
VHKQDLRSLG LCLVPVSSTF PVANGTATGF WTPSYEGSFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023748860.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A2J6JHP8	0.0	A0A2J6JHP8_LACSA; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	5e-98	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	1e-49	bHLH family protein